One way to do this is first attach the female as a spouse and then attach the males children to them as parents (in the family view select edit>attach menu). Having done that you need to look at the relationship view in the person screen. Selecting a relationship e.g., father gives you a drop-down menu of the status of the relationship (biological, adopted, etc ) select one. A similar relationship status can be done for the couple (married, partners etc) together with the current status (ongoing, separated)
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